Variant report

Variant	rs17639574
Chromosome Location	chr19:36675065-36675066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36630495..36633195-chr19:36673686..36676054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126247	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7250473	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv2752541	chr19:36563057-36690874	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv579425	chr19:36643695-36685753	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36653200-36681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:36653200-36684600	Weak transcription	Aorta	Aorta
3	chr19:36661800-36684600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr19:36661800-36686800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:36662000-36684800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr19:36669200-36685000	Weak transcription	Stomach Mucosa	stomach
7	chr19:36669600-36704800	Weak transcription	Psoas Muscle	Psoas
8	chr19:36672800-36678200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr19:36673800-36704800	Weak transcription	Fetal Kidney	kidney
10	chr19:36674000-36685200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr19:36674000-36704800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:36674200-36676200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr19:36674200-36685000	Weak transcription	Fetal Thymus	thymus
14	chr19:36674200-36685600	Weak transcription	Colon Smooth Muscle	Colon
15	chr19:36674200-36687200	Weak transcription	GM12878-XiMat	blood
16	chr19:36674400-36682600	Weak transcription	Lung	lung
17	chr19:36674400-36683200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr19:36674400-36684200	Weak transcription	HUVEC	blood vessel
19	chr19:36674400-36684600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr19:36674400-36684600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr19:36674400-36684600	Weak transcription	Fetal Intestine Large	intestine
22	chr19:36674400-36684600	Weak transcription	Left Ventricle	heart
23	chr19:36674400-36684600	Weak transcription	Pancreas	Pancrea
24	chr19:36674400-36684800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:36674400-36684800	Weak transcription	Right Ventricle	heart
26	chr19:36674400-36685200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr19:36674400-36685200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr19:36674400-36690000	Weak transcription	NHDF-Ad	bronchial
29	chr19:36674400-36704600	Weak transcription	Fetal Brain Male	brain
30	chr19:36674600-36676800	Weak transcription	Fetal Stomach	stomach
31	chr19:36674600-36677400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr19:36674600-36677600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr19:36674600-36679800	Weak transcription	Brain Germinal Matrix	brain
34	chr19:36674600-36680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr19:36674600-36680800	Weak transcription	A549	lung
36	chr19:36674600-36682200	Weak transcription	Fetal Muscle Leg	muscle
37	chr19:36674600-36682400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr19:36674600-36682400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr19:36674600-36682400	Weak transcription	Brain Hippocampus Middle	brain
40	chr19:36674600-36682400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr19:36674600-36682400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr19:36674600-36682600	Weak transcription	Liver	Liver
43	chr19:36674600-36682600	Weak transcription	Brain Angular Gyrus	brain
44	chr19:36674600-36682800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr19:36674600-36682800	Weak transcription	Fetal Intestine Small	intestine
46	chr19:36674600-36683400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr19:36674600-36683400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr19:36674600-36683600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr19:36674600-36683600	Weak transcription	Fetal Brain Female	brain
50	chr19:36674600-36683800	Weak transcription	Brain Inferior Temporal Lobe	brain

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