Variant report

Variant	rs17643904
Chromosome Location	chr15:92484263-92484264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:92484144-92484749	Hela-S3	cervix:	n/a	n/a
2	TFAP2A	chr15:92484099-92484792	Hela-S3	cervix:	n/a	chr15:92484196-92484207 chr15:92484404-92484419 chr15:92484196-92484207
3	TCF7L2	chr15:92483992-92484643	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr15:92484240-92487674	MCF10A-Er-Src	breast:	n/a	n/a
5	EBF1	chr15:92483530-92484318	GM12878	blood:	n/a	chr15:92483666-92483676 chr15:92483665-92483678
6	GTF2F1	chr15:92483948-92484652	Hela-S3	cervix:	n/a	n/a
7	SMC3	chr15:92484157-92484758	Hela-S3	cervix:	n/a	n/a
8	NR2F2	chr15:92483902-92484667	MCF-7	breast:	n/a	chr15:92484185-92484200
9	TFAP2C	chr15:92483933-92484844	Hela-S3	cervix:	n/a	n/a
10	MAZ	chr15:92484222-92484743	Hela-S3	cervix:	n/a	n/a
11	KAP1	chr15:92484069-92484488	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17644554	1.00[AFR][1000 genomes]
rs4984327	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92469400-92485800	Weak transcription	Aorta	Aorta
2	chr15:92475400-92484600	Weak transcription	Primary T cells from cord blood	blood
3	chr15:92478800-92488000	Enhancers	Fetal Heart	heart
4	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:92479200-92485000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:92479400-92485000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:92479800-92486000	Enhancers	Brain Hippocampus Middle	brain
8	chr15:92480200-92485000	Weak transcription	NHLF	lung
9	chr15:92480600-92485000	Weak transcription	Adipose Nuclei	Adipose
10	chr15:92480600-92485600	Weak transcription	Fetal Brain Female	brain
11	chr15:92480600-92485600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:92480600-92485600	Weak transcription	Psoas Muscle	Psoas
13	chr15:92480600-92486000	Weak transcription	HSMMtube	muscle
14	chr15:92480800-92485000	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:92480800-92485800	Weak transcription	Fetal Brain Male	brain
16	chr15:92481800-92485000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:92481800-92486000	Enhancers	Right Atrium	heart
18	chr15:92481800-92492600	Enhancers	Right Ventricle	heart
19	chr15:92482000-92488200	Enhancers	Left Ventricle	heart
20	chr15:92482200-92485400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr15:92482200-92486400	Enhancers	Pancreas	Pancrea
22	chr15:92482200-92487200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:92482200-92492400	Enhancers	Brain Substantia Nigra	brain
24	chr15:92482400-92484600	Enhancers	Esophagus	oesophagus
25	chr15:92482400-92485000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr15:92482600-92484400	Enhancers	Stomach Smooth Muscle	stomach
27	chr15:92482600-92485000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr15:92482600-92485000	Enhancers	HMEC	breast
29	chr15:92482600-92485400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:92482600-92485800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:92482600-92486000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:92482600-92486400	Enhancers	Lung	lung
33	chr15:92482600-92488000	Enhancers	Ovary	ovary
34	chr15:92482600-92488000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr15:92482600-92491800	Enhancers	Placenta	Placenta
36	chr15:92482800-92484600	Enhancers	Colonic Mucosa	Colon
37	chr15:92482800-92484800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr15:92482800-92485200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:92482800-92485600	Enhancers	A549	lung
40	chr15:92482800-92486000	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr15:92482800-92488200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:92483000-92484800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:92483000-92484800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:92483000-92485400	Enhancers	H1 Cell Line	embryonic stem cell
45	chr15:92483000-92485600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:92483000-92486000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:92483000-92486000	Enhancers	Brain Cingulate Gyrus	brain
48	chr15:92483000-92487200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr15:92483000-92487800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:92483200-92484400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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