Variant report

Variant	rs4984327
Chromosome Location	chr15:92610138-92610139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92605416..92607446-chr15:92609381..92611493,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12591928	0.88[AMR][1000 genomes]
rs17643904	1.00[AFR][1000 genomes]
rs17644554	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92600800-92610200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:92603400-92611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:92605800-92612000	Weak transcription	Spleen	Spleen
7	chr15:92605800-92612400	Weak transcription	Ovary	ovary
8	chr15:92606000-92610400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:92606000-92610800	Weak transcription	Brain Substantia Nigra	brain
10	chr15:92606200-92610400	Weak transcription	Fetal Brain Male	brain
11	chr15:92606200-92611200	Weak transcription	Brain Anterior Caudate	brain
12	chr15:92606400-92612600	Weak transcription	Aorta	Aorta
13	chr15:92606600-92610400	Weak transcription	Right Ventricle	heart
14	chr15:92606600-92611200	Weak transcription	Left Ventricle	heart
15	chr15:92606800-92611000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:92606800-92612000	Weak transcription	Fetal Heart	heart
17	chr15:92607000-92611600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:92609800-92616000	Enhancers	Brain Cingulate Gyrus	brain
19	chr15:92610000-92610200	Enhancers	Brain Angular Gyrus	brain
20	chr15:92610000-92610200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:92610000-92610600	Enhancers	Esophagus	oesophagus
22	chr15:92610000-92610600	Enhancers	Lung	lung
23	chr15:92610000-92613000	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links