Variant report

Variant	rs1764621
Chromosome Location	chr1:197259998-197259999
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1764790	1.00[AFR][1000 genomes]
rs482549	1.00[AFR][1000 genomes]
rs662152	1.00[AFR][1000 genomes]
rs671076	1.00[AFR][1000 genomes]
rs672769	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197257400-197273400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:197259400-197260000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:197259400-197260000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:197259400-197260200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:197259800-197260000	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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