Variant report

Variant	rs672769
Chromosome Location	chr1:197274118-197274119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1764621	1.00[AFR][1000 genomes]
rs1764630	1.00[MKK][hapmap]
rs1764790	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs482549	1.00[AFR][1000 genomes]
rs662152	1.00[AFR][1000 genomes]
rs671076	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197269200-197275000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:197272000-197275000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:197273400-197275000	Enhancers	Brain Anterior Caudate	brain
4	chr1:197273400-197277000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:197273400-197277200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:197273600-197274600	Enhancers	Brain Substantia Nigra	brain
7	chr1:197273600-197275400	Enhancers	Brain Angular Gyrus	brain
8	chr1:197273600-197277000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:197273800-197274200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:197273800-197274200	Enhancers	Brain Hippocampus Middle	brain
11	chr1:197273800-197274200	Enhancers	Right Atrium	heart
12	chr1:197273800-197275400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:197273800-197275600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:197274000-197275000	Weak transcription	Brain Germinal Matrix	brain
15	chr1:197274000-197275200	Weak transcription	HSMMtube	muscle
16	chr1:197274000-197282200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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