Variant report

Variant	rs17647207
Chromosome Location	chr11:100820663-100820664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100687718..100690615-chr11:100819413..100821469,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11224514	1.00[LWK][hapmap]
rs34501581	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:100798600-100826600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:100798600-100828200	Weak transcription	Gastric	stomach
5	chr11:100798800-100832200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:100800200-100846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:100800800-100835800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:100801000-100823200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:100801000-100832400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:100801000-100835000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:100801400-100833800	Weak transcription	NH-A	brain
12	chr11:100803000-100822600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:100804000-100826200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:100806600-100837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:100806800-100832400	Weak transcription	Fetal Intestine Large	intestine
16	chr11:100807800-100844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:100808000-100831200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:100808000-100832200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:100808000-100846600	Weak transcription	Ovary	ovary
20	chr11:100810000-100852200	Weak transcription	Small Intestine	intestine
21	chr11:100810400-100845000	Weak transcription	Primary B cells from cord blood	blood
22	chr11:100810600-100848400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:100812000-100825000	Weak transcription	Pancreas	Pancrea
24	chr11:100812000-100826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:100812000-100832000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:100812000-100841000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:100813000-100832400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:100813000-100848600	Weak transcription	A549	lung
29	chr11:100813200-100825200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:100813200-100832000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:100813200-100832000	Weak transcription	Adipose Nuclei	Adipose
32	chr11:100813200-100832000	Weak transcription	Fetal Lung	lung
33	chr11:100813200-100838800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:100813200-100841400	Weak transcription	Fetal Stomach	stomach
35	chr11:100813200-100846600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:100813400-100834800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:100813800-100834000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:100814000-100831600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:100814200-100830000	Weak transcription	Fetal Heart	heart
40	chr11:100814200-100835600	Weak transcription	Dnd41	blood
41	chr11:100815400-100830200	Weak transcription	Placenta	Placenta
42	chr11:100815400-100832800	Weak transcription	HSMM	muscle
43	chr11:100815800-100830400	Weak transcription	Liver	Liver
44	chr11:100816200-100832000	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:100819000-100820800	Enhancers	HUVEC	blood vessel
46	chr11:100820200-100832800	Weak transcription	HSMMtube	muscle
47	chr11:100820400-100841400	Weak transcription	Right Ventricle	heart
48	chr11:100820400-100847000	Weak transcription	Fetal Kidney	kidney
49	chr11:100820600-100831800	Weak transcription	Left Ventricle	heart

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