Variant report

Variant	rs34501581
Chromosome Location	chr11:100792708-100792709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100790778..100793408-chr11:100799342..100801098,2	MCF-7	breast:
2	chr11:100678648..100681176-chr11:100792027..100794117,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17647207	1.00[AFR][1000 genomes]
rs36045870	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
5	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:100776000-100794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:100777400-100794200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:100779800-100794200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:100784000-100808800	Weak transcription	Primary B cells from cord blood	blood
10	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
11	chr11:100786200-100794000	Weak transcription	HSMMtube	muscle
12	chr11:100786800-100806800	Weak transcription	Placenta	Placenta
13	chr11:100790000-100796600	Weak transcription	NHEK	skin
14	chr11:100790000-100803200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:100790200-100793000	Weak transcription	HSMM	muscle
16	chr11:100790200-100793600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:100790200-100793800	Weak transcription	Fetal Stomach	stomach
18	chr11:100790200-100793800	Weak transcription	Osteobl	bone
19	chr11:100790200-100796600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:100790200-100798200	Weak transcription	Fetal Heart	heart
21	chr11:100790200-100812600	Weak transcription	Stomach Mucosa	stomach
22	chr11:100790400-100796200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:100790400-100806600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:100790600-100792800	Weak transcription	Liver	Liver
25	chr11:100790600-100794000	Weak transcription	NH-A	brain
26	chr11:100790800-100798200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:100791800-100796600	Weak transcription	Hela-S3	cervix
28	chr11:100791800-100796800	Weak transcription	A549	lung
29	chr11:100792000-100792800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:100792600-100792800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:100792600-100793000	Genic enhancers	Fetal Muscle Leg	muscle
32	chr11:100792600-100794000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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