Variant report

Variant	rs17652834
Chromosome Location	chr9:8664452-8664453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511505	0.88[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs10511506	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11792966	0.82[YRI][hapmap]
rs1337808	0.85[JPT][hapmap]
rs1434266	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16928196	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs17573565	0.88[CEU][hapmap]
rs2137346	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2137347	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2175595	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs55855913	0.83[EUR][1000 genomes]
rs56003760	0.93[ASN][1000 genomes]
rs56158447	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66940098	0.91[EUR][1000 genomes]
rs72698237	0.81[EUR][1000 genomes]
rs72698246	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72698247	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72698258	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72698284	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72698291	1.00[ASN][1000 genomes]
rs72698297	0.83[EUR][1000 genomes]
rs72700305	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700307	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700314	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700318	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700328	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700332	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700354	0.81[ASN][1000 genomes]
rs72700357	0.81[ASN][1000 genomes]
rs9697029	0.88[CEU][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8652800-8669000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:8653800-8664800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:8660600-8668000	Weak transcription	Fetal Brain Female	brain
4	chr9:8660800-8672400	Weak transcription	Brain Germinal Matrix	brain
5	chr9:8661000-8666000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:8661200-8664600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:8661400-8666200	Weak transcription	Liver	Liver
8	chr9:8661400-8668800	Weak transcription	Fetal Brain Male	brain
9	chr9:8661400-8677400	Weak transcription	Brain Angular Gyrus	brain
10	chr9:8664000-8664600	Enhancers	Brain Cingulate Gyrus	brain
11	chr9:8664200-8665400	Enhancers	Fetal Heart	heart
12	chr9:8664400-8664600	Enhancers	Brain Anterior Caudate	brain
13	chr9:8664400-8665000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr9:8664400-8665200	Enhancers	Brain Hippocampus Middle	brain
15	chr9:8664400-8665600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:8664400-8666000	Enhancers	Brain Substantia Nigra	brain

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