Variant report

Variant	rs72698237
Chromosome Location	chr9:8619698-8619699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10511505	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1337808	0.96[ASN][1000 genomes]
rs17652834	0.81[EUR][1000 genomes]
rs55855913	0.86[EUR][1000 genomes]
rs56003760	0.81[EUR][1000 genomes]
rs56158447	0.91[EUR][1000 genomes]
rs66940098	0.81[EUR][1000 genomes]
rs72698229	0.92[EUR][1000 genomes]
rs72698241	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72698246	0.87[EUR][1000 genomes]
rs72698247	0.98[EUR][1000 genomes]
rs72698258	0.94[EUR][1000 genomes]
rs72698284	0.81[EUR][1000 genomes]
rs72698291	0.85[EUR][1000 genomes]
rs72698297	0.84[EUR][1000 genomes]
rs72700305	0.86[EUR][1000 genomes]
rs72700307	0.86[EUR][1000 genomes]
rs72700314	0.87[EUR][1000 genomes]
rs72700318	0.92[EUR][1000 genomes]
rs72700328	0.90[EUR][1000 genomes]
rs9697029	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892230	chr9:8569186-8643259	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv442133	chr9:8615659-8620138	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8614400-8627000	Weak transcription	Fetal Lung	lung
2	chr9:8615200-8621200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:8615200-8627200	Weak transcription	Brain Germinal Matrix	brain
4	chr9:8615400-8620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:8615400-8624000	Weak transcription	Brain Angular Gyrus	brain
6	chr9:8615400-8626600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:8615400-8628000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:8615400-8628000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:8615400-8632000	Weak transcription	Fetal Brain Male	brain
10	chr9:8615600-8620800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:8615600-8620800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:8615600-8627800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:8615600-8629200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:8616800-8648000	Weak transcription	Fetal Kidney	kidney
15	chr9:8617400-8622200	Weak transcription	Fetal Heart	heart
16	chr9:8618400-8621600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:8618800-8621800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links