Variant report

Variant	rs17657660
Chromosome Location	chr19:41639520-41639521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10408019	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10408317	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10409701	1.00[CHB][hapmap]
rs10410747	0.84[EUR][1000 genomes]
rs10412491	0.84[EUR][1000 genomes]
rs10426454	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs16974961	1.00[CHB][hapmap]
rs4803431	0.88[EUR][1000 genomes]
rs7256466	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs8179181	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41627400-41641600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:41634200-41640400	Weak transcription	Esophagus	oesophagus
3	chr19:41634200-41640800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:41634200-41641400	Weak transcription	Right Ventricle	heart
5	chr19:41634200-41641600	Weak transcription	Left Ventricle	heart
6	chr19:41634200-41641600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr19:41634800-41640800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr19:41634800-41641000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr19:41637400-41640400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:41637400-41640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:41638600-41639800	Enhancers	Fetal Heart	heart
12	chr19:41639200-41640200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr19:41639200-41640200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr19:41639400-41639600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:41639400-41639600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:41639400-41639600	Enhancers	Lung	lung
17	chr19:41639400-41639600	Bivalent Enhancer	HSMMtube	muscle
18	chr19:41639400-41639600	Bivalent Enhancer	NHEK	skin
19	chr19:41639400-41640000	Enhancers	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links