Variant report

Variant	rs17661920
Chromosome Location	chr8:114086821-114086822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114086615..114089579-chr8:114091376..114092962,2	MCF-7	breast:
2	chr8:114079186..114080710-chr8:114084820..114087800,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10505200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10505201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17604488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17605056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs17605272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17606114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17606509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17607317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17661766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17662060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17680534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17681368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35653877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs56137168	0.81[EUR][1000 genomes]
rs56214941	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56362921	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57236500	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59767974	0.82[EUR][1000 genomes]
rs67017686	0.81[EUR][1000 genomes]
rs67088257	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6996697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7006410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs72683890	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685806	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72685845	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72685846	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72685847	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72685897	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72687620	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72687621	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72687623	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7817723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7830924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7834149	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753160	chr8:113920441-114190390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv534557	chr8:113929740-114131155	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2756532	chr8:113931884-114120265	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv891331	chr8:113951265-114108147	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2752734	chr8:113972011-114113977	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links