Variant report

Variant	rs17607317
Chromosome Location	chr8:114234744-114234745
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114228732..114230731-chr8:114233226..114235418,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10505200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10505201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17604488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17605056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17605272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17606114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17606509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17608734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17661766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17661920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17662060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17680534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17681368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17681667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17682275	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17682329	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2054454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35653877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs56137168	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56214941	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56362921	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57236500	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58207334	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58426306	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59767974	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67017686	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67088257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67927045	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68028912	0.90[ASN][1000 genomes]
rs68174149	0.85[ASN][1000 genomes]
rs6996697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7004306	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7006410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs72683890	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72685806	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72685845	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72685846	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72685847	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72685897	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72687620	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687621	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687623	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7828401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs7830924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7834149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7842427	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1019367	chr8:114205501-114288454	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1034285	chr8:114227114-114278041	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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