Variant report

Variant	rs17667167
Chromosome Location	chr6:16631209-16631210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10949371	0.81[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs12198838	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs12524527	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1535602	1.00[ASN][1000 genomes]
rs17603856	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17669102	1.00[ASN][1000 genomes]
rs2143067	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2327995	1.00[ASN][1000 genomes]
rs62387972	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16584000-16670000	Weak transcription	Fetal Brain Male	brain
2	chr6:16585400-16644800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:16592600-16645000	Weak transcription	Adipose Nuclei	Adipose
4	chr6:16592800-16635200	Weak transcription	Aorta	Aorta
5	chr6:16597600-16633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:16602400-16636400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:16605200-16632400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:16605200-16635000	Weak transcription	Liver	Liver
9	chr6:16606000-16653200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:16609800-16639200	Weak transcription	Fetal Intestine Large	intestine
11	chr6:16619000-16636400	Weak transcription	Ovary	ovary
12	chr6:16621200-16634000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:16621600-16633600	Weak transcription	Pancreas	Pancrea
14	chr6:16622200-16651400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:16622800-16632800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:16623200-16633600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:16623200-16633600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:16623200-16634200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:16623800-16633600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:16623800-16634000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:16623800-16634400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:16623800-16636000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:16623800-16636200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:16624000-16633600	Weak transcription	HepG2	liver
25	chr6:16624000-16636200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:16624000-16636400	Weak transcription	Hela-S3	cervix
27	chr6:16625400-16635000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:16625400-16635800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:16625800-16632400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:16625800-16633800	Weak transcription	Gastric	stomach
31	chr6:16625800-16636200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:16626000-16644200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:16626200-16636200	Weak transcription	NHDF-Ad	bronchial
34	chr6:16626200-16636400	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:16626200-16636400	Weak transcription	Psoas Muscle	Psoas
36	chr6:16626200-16654000	Weak transcription	Fetal Kidney	kidney
37	chr6:16626400-16634000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:16626400-16635600	Weak transcription	NHLF	lung
39	chr6:16626400-16635800	Weak transcription	HSMMtube	muscle
40	chr6:16626400-16635800	Weak transcription	Osteobl	bone
41	chr6:16626400-16636000	Weak transcription	NH-A	brain
42	chr6:16627400-16632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:16627400-16633600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:16627400-16633600	Weak transcription	Brain Substantia Nigra	brain
45	chr6:16627400-16633800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:16627400-16636200	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:16627400-16641200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:16627600-16631800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:16627600-16632400	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:16627600-16633800	Weak transcription	Brain Anterior Caudate	brain

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