Variant report

Variant	rs62387972
Chromosome Location	chr6:16656240-16656241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16653572..16656389-chr6:16665170..16667929,2	MCF-7	breast:
2	chr6:16634606..16636809-chr6:16655340..16657241,2	K562	blood:
3	chr6:16655612..16657942-chr6:16667483..16669445,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10949371	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10949372	1.00[ASN][1000 genomes]
rs12198838	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12211723	1.00[ASN][1000 genomes]
rs12524527	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17667167	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2073513	0.82[EUR][1000 genomes]
rs2143067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16584000-16670000	Weak transcription	Fetal Brain Male	brain
2	chr6:16636800-16658800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:16636800-16661800	Weak transcription	Right Ventricle	heart
4	chr6:16636800-16667400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:16636800-16669400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:16636800-16672600	Weak transcription	Gastric	stomach
7	chr6:16637000-16658800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:16640000-16659800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:16640200-16661600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:16640400-16661800	Weak transcription	NHLF	lung
11	chr6:16640600-16656800	Weak transcription	Brain Angular Gyrus	brain
12	chr6:16640600-16659000	Weak transcription	Hela-S3	cervix
13	chr6:16640800-16656400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:16641400-16658800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:16641800-16670400	Weak transcription	Fetal Brain Female	brain
16	chr6:16642000-16657000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:16642200-16658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:16642400-16658800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:16645600-16661800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:16647000-16670000	Weak transcription	Pancreas	Pancrea
21	chr6:16647200-16656600	Weak transcription	Colonic Mucosa	Colon
22	chr6:16648600-16660400	Weak transcription	Small Intestine	intestine
23	chr6:16650000-16658000	Strong transcription	Liver	Liver
24	chr6:16650000-16661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:16650000-16661600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:16650200-16657400	Strong transcription	Fetal Intestine Large	intestine
27	chr6:16650200-16658200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:16650400-16656400	Weak transcription	Osteobl	bone
29	chr6:16651000-16657800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:16651400-16657000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:16651400-16657600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:16651800-16658000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:16651800-16661000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:16652000-16658200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:16652000-16658200	Strong transcription	HepG2	liver
36	chr6:16652000-16662200	Weak transcription	Brain Germinal Matrix	brain
37	chr6:16652200-16658200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:16652600-16658000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:16652600-16658000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:16652600-16658200	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:16652600-16660000	Weak transcription	Stomach Mucosa	stomach
42	chr6:16652600-16661800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:16652800-16659800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:16653000-16657600	Strong transcription	Fetal Stomach	stomach
45	chr6:16653000-16658200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:16653000-16661600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:16653000-16669400	Weak transcription	Thymus	Thymus
48	chr6:16653200-16656800	Enhancers	Fetal Heart	heart
49	chr6:16653200-16658000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr6:16653400-16656600	Strong transcription	Ovary	ovary

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