Variant report

Variant	rs17670088
Chromosome Location	chr3:60595646-60595647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13060659	0.93[CHB][hapmap]
rs13080485	0.94[CHB][hapmap]
rs17624325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17624439	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17624499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17670154	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17670198	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34600947	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs715381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs715382	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7638130	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60594800-60596800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:60595200-60596200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:60595200-60596600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:60595200-60597000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:60595400-60596800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:60595400-60596800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:60595400-60597000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:60595400-60597000	Enhancers	NHLF	lung
9	chr3:60595400-60597000	Enhancers	Osteobl	bone
10	chr3:60595600-60596000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:60595600-60596200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:60595600-60596400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr3:60595600-60596600	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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