Variant report

Variant	rs17670509
Chromosome Location	chr16:10075994-10075995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs17569609	0.93[EUR][1000 genomes]
rs17569693	0.88[YRI][hapmap]
rs17569940	0.90[EUR][1000 genomes]
rs17670318	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17670396	0.94[EUR][1000 genomes]
rs17670544	1.00[YRI][hapmap]
rs17670766	0.90[EUR][1000 genomes]
rs1827197	0.92[EUR][1000 genomes]
rs2315510	0.88[EUR][1000 genomes]
rs3897996	1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4107019	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4254328	0.93[EUR][1000 genomes]
rs4998386	0.93[EUR][1000 genomes]
rs57497843	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57576479	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59775432	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60547225	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7190619	0.80[YRI][hapmap]
rs7190716	0.93[EUR][1000 genomes]
rs7191736	0.93[EUR][1000 genomes]
rs7192121	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7193123	0.92[EUR][1000 genomes]
rs7193471	0.88[EUR][1000 genomes]
rs7197048	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7200719	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72772131	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72772153	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72772155	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72772157	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72772164	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72772166	0.93[EUR][1000 genomes]
rs72772167	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72772168	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72772169	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72772172	0.81[EUR][1000 genomes]
rs72772342	0.88[EUR][1000 genomes]
rs72772347	0.92[EUR][1000 genomes]
rs72772360	0.88[EUR][1000 genomes]
rs72772361	0.88[EUR][1000 genomes]
rs72772364	0.88[EUR][1000 genomes]
rs72774046	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72774047	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72774048	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72774051	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72774055	0.92[EUR][1000 genomes]
rs72774059	0.90[EUR][1000 genomes]
rs72774081	0.92[EUR][1000 genomes]
rs8043728	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8045558	0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9925439	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9929020	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949196	chr16:9937980-10182349	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1037001	chr16:10008023-10476482	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422500	chr16:10008309-10415517	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045882	chr16:10025402-10117992	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052566	chr16:10033178-10260068	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv905333	chr16:10055461-10079124	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2758410	chr16:10060976-10257550	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2758629	chr16:10060976-10257550	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv427973	chr16:10060976-10257550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:10072600-10077000	Weak transcription	GM12878-XiMat	blood
2	chr16:10073000-10076000	Weak transcription	Brain Hippocampus Middle	brain

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