Variant report

Variant	rs4107019
Chromosome Location	chr16:10095199-10095200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10518149	0.91[CEU][hapmap]
rs10518150	0.91[CEU][hapmap]
rs10518151	0.91[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs10518152	0.90[CEU][hapmap]
rs1070479	0.85[CEU][hapmap]
rs1111537	1.00[CEU][hapmap]
rs11866570	1.00[MEX][hapmap]
rs12102500	0.91[CEU][hapmap]
rs12102636	0.91[CEU][hapmap]
rs12102832	0.81[CEU][hapmap]
rs13331030	0.91[CEU][hapmap]
rs13331085	0.91[CEU][hapmap]
rs13331088	0.91[CEU][hapmap]
rs13331428	0.91[CEU][hapmap]
rs13331461	0.91[CEU][hapmap]
rs13331465	0.91[CEU][hapmap]
rs13331514	0.91[CEU][hapmap];1.00[MEX][hapmap]
rs13332665	0.91[CEU][hapmap]
rs13332699	0.91[CEU][hapmap]
rs13336632	0.91[CEU][hapmap];0.82[MEX][hapmap]
rs13336710	0.91[CEU][hapmap]
rs1375072	0.91[CEU][hapmap];0.90[TSI][hapmap]
rs1375075	1.00[CEU][hapmap]
rs1448262	0.91[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs1448268	1.00[CEU][hapmap]
rs1448270	0.91[CEU][hapmap]
rs1448272	1.00[CEU][hapmap]
rs1463128	0.91[CEU][hapmap]
rs17569609	0.81[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs17569693	0.88[ASW][hapmap];0.81[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[YRI][hapmap]
rs17569940	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17570290	0.90[CEU][hapmap]
rs17670318	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17670396	0.81[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17670509	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17670766	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17671033	0.91[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs17671178	0.84[CEU][hapmap]
rs1827197	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2197778	0.84[CEU][hapmap];0.82[MEX][hapmap]
rs2352741	0.88[CEU][hapmap]
rs3897996	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4254328	0.85[EUR][1000 genomes]
rs4780784	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs4998386	0.81[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs57497843	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57576479	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59775432	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60547225	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6497716	0.90[CEU][hapmap]
rs7188291	0.91[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs7189360	0.91[CEU][hapmap]
rs7190321	0.91[CEU][hapmap]
rs7190619	0.91[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs7190716	0.81[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs7191736	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7192121	0.85[EUR][1000 genomes]
rs7192622	0.91[CEU][hapmap]
rs7193123	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7193471	0.96[EUR][1000 genomes]
rs7197048	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7197200	0.91[CEU][hapmap];1.00[MEX][hapmap]
rs7198528	1.00[CEU][hapmap]
rs7200039	0.91[CEU][hapmap]
rs7200649	0.88[CEU][hapmap]
rs7200719	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7201627	1.00[CEU][hapmap]
rs7203194	0.91[CEU][hapmap];1.00[MEX][hapmap]
rs72772131	0.83[EUR][1000 genomes]
rs72772153	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72772155	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72772157	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72772164	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72772166	0.85[EUR][1000 genomes]
rs72772167	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72772168	0.90[EUR][1000 genomes]
rs72772169	0.90[EUR][1000 genomes]
rs72772342	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72772347	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72772360	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72772361	0.96[EUR][1000 genomes]
rs72772364	0.96[EUR][1000 genomes]
rs72774046	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72774047	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774055	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774059	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72774081	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043728	1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045558	0.88[ASW][hapmap];0.81[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8056514	0.91[CEU][hapmap]
rs8056683	0.91[CEU][hapmap]
rs8059547	0.91[CEU][hapmap]
rs8062320	0.91[CEU][hapmap]
rs8062624	0.90[CEU][hapmap]
rs9302409	0.91[CEU][hapmap];1.00[MEX][hapmap]
rs9922383	0.91[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs9922871	0.91[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9925439	0.81[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs9925707	0.91[CEU][hapmap]
rs9927648	0.82[CEU][hapmap]
rs9927914	0.91[CEU][hapmap]
rs9927926	0.91[CEU][hapmap]
rs9929020	0.90[EUR][1000 genomes]
rs9930364	1.00[MEX][hapmap]
rs9933111	0.91[CEU][hapmap];1.00[MEX][hapmap]
rs9933945	0.91[CEU][hapmap]
rs9935774	1.00[CEU][hapmap]
rs9937970	0.91[CEU][hapmap]
rs9938467	1.00[CEU][hapmap]
rs9938777	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949196	chr16:9937980-10182349	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1037001	chr16:10008023-10476482	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422500	chr16:10008309-10415517	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045882	chr16:10025402-10117992	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1052566	chr16:10033178-10260068	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758410	chr16:10060976-10257550	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2758629	chr16:10060976-10257550	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv427973	chr16:10060976-10257550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1037707	chr16:10078790-10529893	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1042727	chr16:10092002-10521096	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv932624	chr16:10092048-10520294	Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:10090600-10095800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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