Variant report

Variant	rs17671591
Chromosome Location	chr5:74615021-74615022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10474433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749783	0.81[CEU][hapmap]
rs12654264	0.81[CEU][hapmap]
rs13358429	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551894	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2878417	0.82[CEU][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes]
rs2878418	0.83[ASN][1000 genomes]
rs3761743	0.81[JPT][hapmap]
rs3931914	0.80[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4703670	0.82[JPT][hapmap]
rs4704208	0.81[AFR][1000 genomes]
rs5744533	0.81[JPT][hapmap]
rs7700468	0.81[JPT][hapmap]
rs7701925	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7703051	0.81[CEU][hapmap]
rs7709282	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74607800-74615800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:74614000-74621400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:74614200-74615600	Enhancers	Primary B cells from cord blood	blood
4	chr5:74614600-74616400	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:74614600-74617400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:74614800-74617200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr5:74614800-74617400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:74614800-74617600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr5:74615000-74615200	Enhancers	K562	blood
10	chr5:74615000-74616600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:74615000-74617400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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