Variant report

Variant	rs3931914
Chromosome Location	chr5:74628014-74628015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr5:74627863-74628047	K562	blood:	n/a	n/a
2	FOXA2	chr5:74627006-74628014	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74626345..74628591-chr5:74631486..74633303,2	MCF-7	breast:

Variant related genes	Relation type
HMGCR	TF binding region
ENSG00000113161	Chromatin interaction
ENSG00000247372	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10038723	0.82[ASN][1000 genomes]
rs10053643	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10462517	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10473972	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10474433	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10474434	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12234032	0.84[EUR][1000 genomes]
rs13358429	0.83[ASN][1000 genomes]
rs17238484	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17671591	0.83[ASN][1000 genomes]
rs28609217	0.82[ASN][1000 genomes]
rs2878418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28851300	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3761742	0.95[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs3761743	0.80[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3846665	0.94[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs3846666	0.82[ASN][1000 genomes]
rs4703670	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4704214	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4704224	0.82[ASN][1000 genomes]
rs5744533	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs5744555	0.95[CEU][hapmap];0.90[JPT][hapmap]
rs6453134	0.82[ASN][1000 genomes]
rs698912	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7356637	0.80[CEU][hapmap];0.90[JPT][hapmap]
rs7700468	0.80[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7701925	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709282	0.80[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7732854	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7737959	0.83[ASN][1000 genomes]
rs9885386	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74619000-74631400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:74619400-74632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74621000-74632200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:74621600-74631200	Weak transcription	A549	lung
5	chr5:74626000-74629200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:74626000-74631800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:74626400-74631400	Weak transcription	K562	blood
8	chr5:74626600-74628400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:74627000-74628400	Enhancers	Liver	Liver
10	chr5:74627000-74628400	Enhancers	Stomach Mucosa	stomach
11	chr5:74627600-74628200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:74627600-74631400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:74627800-74631600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:74628000-74628200	Enhancers	HepG2	liver
15	chr5:74628000-74631200	Weak transcription	Fetal Intestine Small	intestine
16	chr5:74628000-74631800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links