Variant report

Variant	rs28851300
Chromosome Location	chr5:74630189-74630190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10053643	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10462517	0.80[EUR][1000 genomes]
rs10473972	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10474434	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12234032	0.80[EUR][1000 genomes]
rs17238484	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2878418	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846665	0.80[EUR][1000 genomes]
rs3931914	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4703670	0.81[EUR][1000 genomes]
rs4704214	0.80[EUR][1000 genomes]
rs698912	0.80[EUR][1000 genomes]
rs7701925	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7732854	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74619000-74631400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:74619400-74632200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74621000-74632200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:74621600-74631200	Weak transcription	A549	lung
5	chr5:74626000-74631800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:74626400-74631400	Weak transcription	K562	blood
7	chr5:74627600-74631400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:74627800-74631600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:74628000-74631200	Weak transcription	Fetal Intestine Small	intestine
10	chr5:74628000-74631800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:74628200-74631200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:74628400-74631400	Weak transcription	Liver	Liver
13	chr5:74628400-74632000	Weak transcription	Stomach Mucosa	stomach
14	chr5:74628800-74631000	Weak transcription	HepG2	liver
15	chr5:74629200-74631600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:74629400-74631800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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