Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32378101..32380793-chr17:59476352..59477988,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10835887	1.00[CHB][hapmap]
rs10835888	1.00[CHB][hapmap]
rs11031729	1.00[CHB][hapmap]
rs11031731	1.00[CHB][hapmap]
rs11031733	1.00[CHB][hapmap]
rs12282630	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923250	1.00[JPT][hapmap]
rs16923260	1.00[JPT][hapmap]
rs2234593	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs5030228	1.00[JPT][hapmap]
rs5030278	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs5030302	1.00[JPT][hapmap]
rs5030311	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs5030315	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs5030316	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs5030335	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs7105471	1.00[CEU][hapmap]
rs7109881	1.00[ASN][1000 genomes]
rs72896061	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896066	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896067	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17673047	PRR5L	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32375800-32387600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:32379400-32380400	Enhancers	Dnd41	blood
3	chr11:32379400-32381000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:32379600-32379800	Bivalent Enhancer	Fetal Stomach	stomach
5	chr11:32379600-32380400	Enhancers	Fetal Kidney	kidney

Quick Search: