Variant report

Variant	rs11031731
Chromosome Location	chr11:32365430-32365431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:32365119-32365544	GM12878	blood:	n/a	n/a
2	RUNX3	chr11:32365083-32365608	GM12878	blood:	n/a	n/a
3	FOS	chr11:32365281-32365512	MCF10A-Er-Src	breast:	n/a	n/a
4	ZNF384	chr11:32365226-32365482	GM12878	blood:	n/a	n/a
5	NFIC	chr11:32365125-32365506	GM12878	blood:	n/a	n/a
6	STAT3	chr11:32365338-32365479	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr11:32365283-32365511	MCF10A-Er-Src	breast:	n/a	n/a
8	EP300	chr11:32365208-32365523	GM12878	blood:	n/a	n/a
9	FOS	chr11:32365391-32365461	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000227160	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10767930	0.96[ASN][1000 genomes]
rs10767931	0.96[ASN][1000 genomes]
rs10835887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10835888	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10835889	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031714	0.88[EUR][1000 genomes]
rs11031716	0.92[EUR][1000 genomes]
rs11031724	0.93[ASN][1000 genomes]
rs11031726	0.89[ASN][1000 genomes]
rs11031728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11031733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828433	0.92[EUR][1000 genomes]
rs12278882	0.93[ASN][1000 genomes]
rs12280757	0.93[ASN][1000 genomes]
rs12285028	0.91[EUR][1000 genomes]
rs12285041	0.91[EUR][1000 genomes]
rs17673047	1.00[CHB][hapmap]
rs2057178	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889170	0.86[EUR][1000 genomes]
rs61889172	0.86[EUR][1000 genomes]
rs61889173	0.86[EUR][1000 genomes]
rs61889183	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61889186	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61889187	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106353	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7121219	0.88[EUR][1000 genomes]
rs7122775	0.96[ASN][1000 genomes]
rs7123725	0.93[ASN][1000 genomes]
rs7127500	0.93[ASN][1000 genomes]
rs7924866	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11031731	EIF3M	cis	parietal	SCAN
rs11031731	TCP11L1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32361000-32372400	Enhancers	Fetal Heart	heart
2	chr11:32363200-32366000	Weak transcription	Fetal Stomach	stomach
3	chr11:32364400-32366400	Enhancers	Dnd41	blood
4	chr11:32364800-32365600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:32364800-32365800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:32364800-32365800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:32365000-32365600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr11:32365000-32365600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:32365000-32365600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr11:32365000-32365600	Enhancers	GM12878-XiMat	blood
11	chr11:32365000-32365800	Enhancers	Primary T cells from cord blood	blood
12	chr11:32365000-32365800	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:32365000-32365800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:32365000-32365800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:32365000-32366200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:32365200-32365800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr11:32365400-32365800	Weak transcription	Rectal Smooth Muscle	rectum

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