Variant report

Variant	rs7127500
Chromosome Location	chr11:32356128-32356129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10767930	0.96[ASN][1000 genomes]
rs10767931	0.96[ASN][1000 genomes]
rs10835887	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10835888	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10835889	0.85[ASN][1000 genomes]
rs11031716	0.83[EUR][1000 genomes]
rs11031724	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031726	0.96[ASN][1000 genomes]
rs11031728	1.00[ASN][1000 genomes]
rs11031729	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031731	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[ASN][1000 genomes]
rs11031733	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11828433	0.83[EUR][1000 genomes]
rs12278882	1.00[ASN][1000 genomes]
rs12280757	1.00[ASN][1000 genomes]
rs12285028	0.82[EUR][1000 genomes]
rs12285041	0.82[EUR][1000 genomes]
rs17673047	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs2057178	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61889183	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889186	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61889187	0.89[ASN][1000 genomes]
rs7106353	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122775	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123725	1.00[ASN][1000 genomes]
rs7924866	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7127500	EIF3M	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32354600-32357600	Weak transcription	Fetal Heart	heart
2	chr11:32355600-32356200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:32355600-32356200	Enhancers	Brain Germinal Matrix	brain
4	chr11:32355600-32356400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr11:32355600-32356600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:32355800-32356200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr11:32356000-32356800	ZNF genes & repeats	Dnd41	blood

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