Variant report

Variant	rs2057178
Chromosome Location	chr11:32364187-32364188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10767930	0.96[ASN][1000 genomes]
rs10767931	0.96[ASN][1000 genomes]
rs10835887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10835888	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10835889	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031714	0.91[EUR][1000 genomes]
rs11031716	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11031724	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031726	0.89[ASN][1000 genomes]
rs11031728	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031729	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11031731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828433	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12278882	0.93[ASN][1000 genomes]
rs12280757	0.93[ASN][1000 genomes]
rs12285028	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12285041	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17673047	1.00[CHB][hapmap]
rs61889170	0.89[EUR][1000 genomes]
rs61889172	0.88[EUR][1000 genomes]
rs61889173	0.88[EUR][1000 genomes]
rs61889183	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61889186	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61889187	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106353	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7121219	0.91[EUR][1000 genomes]
rs7122775	0.96[ASN][1000 genomes]
rs7123725	0.93[ASN][1000 genomes]
rs7127500	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7924866	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant related diseases (count:2)

Disease	PMID	Source
Tuberculosis	24057671	GWAS catalog
Tuberculosis	22306650	GWAS catalog

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32356800-32364400	Weak transcription	Dnd41	blood
2	chr11:32361000-32372400	Enhancers	Fetal Heart	heart
3	chr11:32363200-32366000	Weak transcription	Fetal Stomach	stomach
4	chr11:32363400-32364400	Weak transcription	Fetal Lung	lung
5	chr11:32363400-32365200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:32363600-32364800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:32363800-32364800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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