Variant report

Variant	rs61889173
Chromosome Location	chr11:32338246-32338247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32332808..32334423-chr11:32337142..32339062,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1022624	0.91[ASN][1000 genomes]
rs1022625	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10488685	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10835883	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10835884	0.91[ASN][1000 genomes]
rs10835885	0.83[ASN][1000 genomes]
rs10835889	0.83[EUR][1000 genomes]
rs11031704	0.91[ASN][1000 genomes]
rs11031714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031716	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031728	0.86[EUR][1000 genomes]
rs11031731	0.86[EUR][1000 genomes]
rs11031733	0.89[EUR][1000 genomes]
rs11828433	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285028	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285041	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361455	0.91[ASN][1000 genomes]
rs2003731	0.91[ASN][1000 genomes]
rs2057178	0.88[EUR][1000 genomes]
rs61889170	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61889172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889183	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61889186	0.89[EUR][1000 genomes]
rs61889187	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7106353	0.92[EUR][1000 genomes]
rs7121219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742994	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs742995	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs742996	0.91[ASN][1000 genomes]
rs7924866	0.92[EUR][1000 genomes]
rs7928458	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7944182	0.91[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32335000-32339400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:32335400-32338800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:32337800-32338800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:32338000-32339000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:32338000-32339800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:32338000-32340000	Enhancers	Fetal Kidney	kidney
7	chr11:32338200-32338800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:32338200-32338800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:32338200-32339800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links