Variant report

Variant	rs61889170
Chromosome Location	chr11:32334541-32334542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32334076..32334672-chr11:32344714..32345706,2	K562	blood:
2	chr11:32334112..32335061-chr11:32395208..32396005,2	MCF-7	breast:
3	chr11:32332711..32334825-chr11:32340533..32342781,2	K562	blood:
4	chr11:32318816..32319798-chr11:32334440..32335206,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1022624	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022625	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488685	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835879	0.81[EUR][1000 genomes]
rs10835883	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835884	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835885	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835889	0.83[EUR][1000 genomes]
rs11031704	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031714	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11031716	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11031728	0.86[EUR][1000 genomes]
rs11031731	0.86[EUR][1000 genomes]
rs11031733	0.89[EUR][1000 genomes]
rs11828433	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12285028	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12285041	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12361455	1.00[ASN][1000 genomes]
rs2003731	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057178	0.89[EUR][1000 genomes]
rs61889172	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61889173	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61889183	0.88[EUR][1000 genomes]
rs61889186	0.89[EUR][1000 genomes]
rs61889187	0.82[EUR][1000 genomes]
rs7106353	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7121219	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs742994	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742995	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742996	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7924866	0.92[EUR][1000 genomes]
rs7928458	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944182	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32329800-32334600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:32332800-32335200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:32333400-32335000	Enhancers	Ovary	ovary
4	chr11:32333400-32335200	Flanking Active TSS	Hela-S3	cervix
5	chr11:32333600-32334600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:32334000-32334600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:32334000-32335000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:32334000-32335000	Enhancers	NH-A	brain
9	chr11:32334000-32335200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:32334200-32334600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:32334200-32334600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:32334200-32334600	Flanking Active TSS	Osteobl	bone
13	chr11:32334200-32334800	Flanking Active TSS	Fetal Kidney	kidney
14	chr11:32334200-32335000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:32334200-32335200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:32334200-32335400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:32334400-32334600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:32334400-32334600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:32334400-32334600	Active TSS	A549	lung
20	chr11:32334400-32334800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:32334400-32334800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr11:32334400-32334800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:32334400-32334800	Enhancers	Left Ventricle	heart
24	chr11:32334400-32334800	Enhancers	Stomach Mucosa	stomach
25	chr11:32334400-32335000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr11:32334400-32335000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:32334400-32335200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:32334400-32336600	Weak transcription	Fetal Lung	lung

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