Variant report

Variant	rs17674223
Chromosome Location	chr14:47827082-47827083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:47825822..47827429-chr14:47839476..47841080,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10143571	0.95[EUR][1000 genomes]
rs10146861	0.94[EUR][1000 genomes]
rs12880688	1.00[AFR][1000 genomes]
rs12891610	1.00[AFR][1000 genomes]
rs17118364	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs17674633	1.00[AFR][1000 genomes]
rs2000031	0.95[EUR][1000 genomes]
rs2297926	0.83[EUR][1000 genomes]
rs2416054	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2900002	0.95[EUR][1000 genomes]
rs34621097	0.90[EUR][1000 genomes]
rs35062234	0.96[EUR][1000 genomes]
rs35406468	0.94[EUR][1000 genomes]
rs35631796	0.96[EUR][1000 genomes]
rs36163714	1.00[AFR][1000 genomes]
rs36181027	1.00[AFR][1000 genomes]
rs4898564	0.95[EUR][1000 genomes]
rs4900739	0.95[EUR][1000 genomes]
rs56929603	0.81[EUR][1000 genomes]
rs7160833	0.80[EUR][1000 genomes]
rs8006114	0.94[EUR][1000 genomes]
rs9323131	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040847	chr14:46905206-47869359	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv542085	chr14:46905206-47869359	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1049865	chr14:46905406-47869220	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542087	chr14:46905406-47869220	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1048316	chr14:47297113-47885723	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1046326	chr14:47629646-47845903	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv530661	chr14:47754197-47937396	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv498118	chr14:47754197-48274409	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:47819200-47834400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:47826600-47828000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:47826800-47827400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr14:47826800-47827600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr14:47826800-47828000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:47826800-47834600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:47827000-47827600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:47827000-47827600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr14:47827000-47827600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:47827000-47828000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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