Variant report

Variant	rs36181027
Chromosome Location	chr2:9111032-9111033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12589354	0.89[EUR][1000 genomes]
rs12880688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12891610	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17118516	0.89[EUR][1000 genomes]
rs17674223	1.00[AFR][1000 genomes]
rs17674633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36163714	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4898566	0.86[EUR][1000 genomes]
rs4900741	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833359	chr2:8950324-9130801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv517367	chr2:8993505-9186516	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9094800-9112800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:9095600-9116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:9095600-9123800	Weak transcription	HMEC	breast
4	chr2:9098200-9113800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:9106600-9115600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:9106800-9120000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:9106800-9125600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:9107000-9116000	Weak transcription	Brain Angular Gyrus	brain
9	chr2:9107000-9116800	Weak transcription	NHEK	skin
10	chr2:9107200-9114200	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:9107400-9114000	Weak transcription	K562	blood
12	chr2:9107400-9116000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:9109000-9116400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:9109800-9114400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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