Variant report

Variant	rs17674512
Chromosome Location	chr5:75552355-75552356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75030757..75031393-chr5:75551873..75552728,2	K562	blood:
2	chr5:75370186..75371274-chr5:75551816..75552790,4	MCF-7	breast:
3	chr5:75534573..75536259-chr5:75552032..75554842,2	K562	blood:
4	chr5:75030734..75031635-chr5:75551827..75552781,3	MCF-7	breast:
5	chr5:75030589..75031686-chr5:75551613..75552708,6	MCF-7	breast:
6	chr5:75470625..75471456-chr5:75551799..75552684,5	MCF-7	breast:
7	chr5:75311875..75312445-chr5:75551956..75552709,2	MCF-7	breast:
8	chr5:75181800..75182723-chr5:75551788..75552375,3	K562	blood:
9	chr5:75370241..75371009-chr5:75551554..75552357,4	K562	blood:
10	chr5:75370056..75370744-chr5:75551849..75552754,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16873252	1.00[CHB][hapmap]
rs17674367	1.00[CHB][hapmap]
rs17747410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs57600986	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75550200-75553200	Weak transcription	Gastric	stomach
2	chr5:75551800-75552400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr5:75551800-75552600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:75551800-75552600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:75551800-75552600	Enhancers	Fetal Heart	heart
6	chr5:75551800-75552800	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr5:75551800-75555000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:75551800-75555200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:75552000-75552400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:75552000-75552400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
11	chr5:75552000-75552600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:75552000-75552600	Enhancers	Primary hematopoietic stem cells	blood
13	chr5:75552000-75552600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr5:75552000-75553000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:75552000-75553400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:75552200-75552400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:75552200-75552400	Bivalent Enhancer	Brain Angular Gyrus	brain
18	chr5:75552200-75553200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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