Variant report

Variant	rs57600986
Chromosome Location	chr5:75552850-75552851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17674512	0.96[ASN][1000 genomes]
rs17747410	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75550200-75553200	Weak transcription	Gastric	stomach
2	chr5:75551800-75555000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:75551800-75555200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:75552000-75553000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:75552000-75553400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:75552200-75553200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:75552600-75553600	Weak transcription	Fetal Heart	heart
8	chr5:75552600-75553800	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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