Variant report

Variant	rs17676837
Chromosome Location	chr5:127704249-127704250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10519991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10520002	1.00[YRI][hapmap]
rs1366455	1.00[YRI][hapmap]
rs154001	0.86[CHB][hapmap]
rs154003	1.00[CHB][hapmap]
rs17608902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676891	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255725	1.00[CHB][hapmap]
rs255730	1.00[CHB][hapmap]
rs27913	0.85[CHB][hapmap]
rs34806635	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs364671	1.00[CHB][hapmap]
rs468026	1.00[CHB][hapmap]
rs468182	1.00[CHB][hapmap]
rs468200	1.00[CHB][hapmap]
rs468229	1.00[CHB][hapmap]
rs56090677	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599697	chr5:127563563-127731210	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv830483	chr5:127595570-127705124	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127672000-127746000	Weak transcription	NHDF-Ad	bronchial
2	chr5:127673800-127706400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:127675600-127742200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:127677800-127711400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:127679200-127731200	Weak transcription	Right Ventricle	heart
6	chr5:127679800-127704400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:127681400-127704400	Weak transcription	Ovary	ovary
8	chr5:127681400-127706600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:127681600-127714400	Weak transcription	HUVEC	blood vessel
10	chr5:127685400-127725000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:127685800-127712400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:127686000-127738400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:127686000-127742000	Weak transcription	A549	lung
14	chr5:127686600-127704800	Weak transcription	NH-A	brain
15	chr5:127686800-127704400	Weak transcription	Left Ventricle	heart
16	chr5:127687600-127704400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr5:127690200-127724800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:127693400-127714600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:127695200-127737800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:127695800-127714000	Weak transcription	Fetal Kidney	kidney
21	chr5:127696000-127716000	Strong transcription	Placenta	Placenta
22	chr5:127696400-127715000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:127696800-127738200	Weak transcription	Fetal Lung	lung
24	chr5:127697000-127712200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:127699000-127704400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:127700600-127719600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:127701800-127716000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr5:127702000-127706400	Strong transcription	HMEC	breast
29	chr5:127702200-127706400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:127702400-127705400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr5:127702400-127705800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:127702400-127706600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:127702400-127706800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:127702600-127704800	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr5:127702600-127706600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr5:127702600-127714400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:127703000-127710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:127703600-127705600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:127703600-127706600	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr5:127703600-127707200	Strong transcription	Fetal Heart	heart
41	chr5:127703800-127705800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:127703800-127705800	Strong transcription	NHEK	skin
43	chr5:127703800-127712800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:127704200-127705000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:127704200-127705000	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:127704200-127705000	Strong transcription	Fetal Intestine Large	intestine
47	chr5:127704200-127705000	Strong transcription	Fetal Stomach	stomach
48	chr5:127704200-127705200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:127704200-127705800	Strong transcription	Fetal Muscle Leg	muscle
50	chr5:127704200-127706400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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