Variant report

Variant	rs17676891
Chromosome Location	chr5:127714784-127714785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10519991	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10520002	1.00[YRI][hapmap]
rs1366455	1.00[YRI][hapmap]
rs154001	0.88[CHD][hapmap]
rs154003	0.85[CHB][hapmap]
rs17608902	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676837	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255725	0.85[CHB][hapmap]
rs255730	0.85[CHB][hapmap]
rs34806635	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs364671	0.85[CHB][hapmap]
rs468026	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs468182	0.85[CHB][hapmap]
rs468200	0.85[CHB][hapmap]
rs468229	1.00[CHB][hapmap]
rs56090677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599697	chr5:127563563-127731210	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127672000-127746000	Weak transcription	NHDF-Ad	bronchial
2	chr5:127675600-127742200	Weak transcription	Fetal Intestine Small	intestine
3	chr5:127679200-127731200	Weak transcription	Right Ventricle	heart
4	chr5:127685400-127725000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:127686000-127738400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:127686000-127742000	Weak transcription	A549	lung
7	chr5:127690200-127724800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:127695200-127737800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:127696000-127716000	Strong transcription	Placenta	Placenta
10	chr5:127696400-127715000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:127696800-127738200	Weak transcription	Fetal Lung	lung
12	chr5:127700600-127719600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:127701800-127716000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr5:127704800-127741800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:127705000-127715400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:127705000-127715400	Weak transcription	Fetal Stomach	stomach
17	chr5:127705000-127724800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:127705000-127730200	Weak transcription	Fetal Intestine Large	intestine
19	chr5:127705200-127718000	Weak transcription	Ovary	ovary
20	chr5:127705200-127724800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:127705600-127722000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:127705800-127731200	Weak transcription	Left Ventricle	heart
23	chr5:127710600-127716000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:127710600-127724200	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:127711200-127724800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:127711200-127724800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr5:127712600-127715400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:127712800-127723800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:127712800-127725000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr5:127713200-127716200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:127713200-127718000	Weak transcription	Fetal Heart	heart
32	chr5:127713200-127724800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:127713200-127725000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:127713200-127727600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:127713400-127715000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:127713600-127714800	Enhancers	NHEK	skin
37	chr5:127713600-127724800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr5:127713800-127715400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:127714000-127714800	Enhancers	Fetal Kidney	kidney
40	chr5:127714200-127716200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:127714200-127724000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr5:127714400-127715200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:127714600-127743000	Weak transcription	HMEC	breast

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