Variant report

Variant	rs17679928
Chromosome Location	chr2:66919316-66919317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MEIS1-3	chr2:66918804-66921094	XLOC_001508

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56284470	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72824593	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72824594	0.83[ASN][1000 genomes]
rs72824596	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72826709	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834248	chr2:66756873-66970378	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:66917000-66922600	Active TSS	Colon Smooth Muscle	Colon
2	chr2:66917400-66920800	Active TSS	Stomach Smooth Muscle	stomach
3	chr2:66917600-66920600	Active TSS	Fetal Kidney	kidney
4	chr2:66917600-66921400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:66917600-66921600	Active TSS	Rectal Smooth Muscle	rectum
6	chr2:66917600-66922400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:66918000-66919400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:66918000-66921200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr2:66918200-66920200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr2:66918200-66920600	Active TSS	Fetal Intestine Small	intestine
11	chr2:66918200-66921000	Active TSS	Fetal Lung	lung
12	chr2:66918200-66921200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr2:66918200-66921400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:66918200-66921400	Active TSS	Fetal Stomach	stomach
15	chr2:66918400-66920600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:66918800-66920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:66918800-66920400	Active TSS	Fetal Intestine Large	intestine
18	chr2:66919000-66921000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr2:66919000-66921800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr2:66919000-66927000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:66919200-66920200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:66919200-66920200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:66919200-66921600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr2:66919200-66925200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr2:66919200-66927200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:66919200-66929000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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