Variant report

Variant	rs72824596
Chromosome Location	chr2:66930489-66930490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17679928	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56284470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72824593	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72824594	1.00[ASN][1000 genomes]
rs72826703	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72826709	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834248	chr2:66756873-66970378	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012523	chr2:66919704-66961372	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:66926400-66932200	Enhancers	Fetal Lung	lung
2	chr2:66927200-66936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:66927600-66931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:66927600-66932000	Enhancers	Rectal Smooth Muscle	rectum
5	chr2:66928800-66930800	Enhancers	Fetal Stomach	stomach
6	chr2:66929200-66945000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:66929800-66931000	Weak transcription	Ovary	ovary
8	chr2:66930000-66934200	Weak transcription	Pancreas	Pancrea
9	chr2:66930200-66930600	Enhancers	Fetal Kidney	kidney
10	chr2:66930200-66932200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links