Variant report

Variant	rs17681618
Chromosome Location	chr8:87368385-87368386
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:87361970..87363918-chr8:87368316..87370352,3	MCF-7	breast:
2	chr8:87136719..87138131-chr8:87367839..87369514,19	MCF-7	breast:
3	chr8:87133855..87135900-chr8:87367338..87370319,2	MCF-7	breast:
4	chr8:87365324..87368411-chr8:87373103..87375611,3	K562	blood:
5	chr8:87362200..87363935-chr8:87364604..87368917,3	K562	blood:
6	chr8:87329883..87331903-chr8:87367165..87369926,2	MCF-7	breast:
7	chr8:87361670..87363931-chr8:87364604..87369462,4	K562	blood:
8	chr8:87365825..87368474-chr8:87368795..87370608,2	K562	blood:
9	chr8:87057249..87059198-chr8:87365906..87368424,2	MCF-7	breast:
10	chr8:87136992..87138056-chr8:87367918..87369461,8	MCF-7	breast:

No data

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10089781	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10093379	0.82[EUR][1000 genomes]
rs10095129	0.81[EUR][1000 genomes]
rs10095537	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10096168	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10103691	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10107072	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956800	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956802	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10956803	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11775728	0.89[ASN][1000 genomes]
rs11782512	0.83[EUR][1000 genomes]
rs11787036	0.89[ASN][1000 genomes]
rs11787318	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11997234	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12543856	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12543887	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12544731	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17608598	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17608967	0.84[ASN][1000 genomes]
rs34895735	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4285463	0.89[ASN][1000 genomes]
rs4581032	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4961187	0.89[ASN][1000 genomes]
rs4961189	0.85[ASN][1000 genomes]
rs4961190	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5024450	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55727343	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55807259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56039487	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56096624	0.87[ASN][1000 genomes]
rs56102132	0.84[EUR][1000 genomes]
rs56122638	0.91[ASN][1000 genomes]
rs56268675	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56395805	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57326273	0.88[EUR][1000 genomes]
rs57644875	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62509414	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62509419	0.94[ASN][1000 genomes]
rs62509421	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62510798	0.84[EUR][1000 genomes]
rs6471273	0.89[ASN][1000 genomes]
rs6471279	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471280	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6471281	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471345	0.82[EUR][1000 genomes]
rs6988601	0.81[EUR][1000 genomes]
rs6996052	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7006017	0.86[ASN][1000 genomes]
rs7015490	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7017719	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71503461	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7460028	0.87[ASN][1000 genomes]
rs7460286	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7461767	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7462727	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7819454	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7824469	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7825405	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7830128	0.94[ASN][1000 genomes]
rs7835743	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7838007	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9283961	0.86[ASN][1000 genomes]
rs9642913	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87355800-87405600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87356800-87403800	Weak transcription	Aorta	Aorta
3	chr8:87357000-87375600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:87357200-87368800	Weak transcription	Primary B cells from cord blood	blood
5	chr8:87357200-87369600	Weak transcription	HSMM	muscle
6	chr8:87357400-87372600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:87357400-87403400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:87357600-87368800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:87357600-87368800	Weak transcription	Brain Angular Gyrus	brain
10	chr8:87357600-87374600	Weak transcription	HUVEC	blood vessel
11	chr8:87357600-87382200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:87357800-87368600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:87357800-87381000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr8:87357800-87382000	Weak transcription	Placenta	Placenta
15	chr8:87357800-87383200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
17	chr8:87358000-87369000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr8:87359000-87383600	Weak transcription	Dnd41	blood
19	chr8:87359800-87372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:87360600-87369800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:87361800-87369600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:87362200-87368400	Enhancers	HepG2	liver
23	chr8:87362200-87368800	Weak transcription	Adipose Nuclei	Adipose
24	chr8:87362200-87369600	Enhancers	Stomach Mucosa	stomach
25	chr8:87362400-87378200	Weak transcription	Gastric	stomach
26	chr8:87363600-87369600	Weak transcription	HMEC	breast
27	chr8:87363600-87372600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:87363800-87393800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:87364000-87371000	Weak transcription	Psoas Muscle	Psoas
30	chr8:87364000-87397400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:87364200-87372600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:87364200-87373200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr8:87364600-87370200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr8:87364800-87369400	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr8:87364800-87370000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:87364800-87370800	Weak transcription	Left Ventricle	heart
37	chr8:87364800-87371600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr8:87365000-87372600	Weak transcription	Right Ventricle	heart
39	chr8:87365200-87369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:87365200-87370200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr8:87365400-87368800	Weak transcription	Fetal Kidney	kidney
42	chr8:87365800-87369400	Enhancers	Brain Cingulate Gyrus	brain
43	chr8:87366000-87368800	Enhancers	Brain Hippocampus Middle	brain
44	chr8:87366000-87369200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr8:87366000-87369800	Weak transcription	Ovary	ovary
46	chr8:87366000-87372600	Weak transcription	Small Intestine	intestine
47	chr8:87366000-87398200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr8:87366400-87368600	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr8:87366400-87369000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr8:87366400-87369200	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links