Variant report

Variant	rs71503461
Chromosome Location	chr8:87342241-87342242
allele	AA/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87341012..87343930-chr8:87343951..87346543,2	MCF-7	breast:
2	chr8:87341673..87343507-chr8:87352769..87354965,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10089781	0.84[ASN][1000 genomes]
rs10095537	0.86[ASN][1000 genomes]
rs10096168	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10103691	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10107072	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956800	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10956802	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10956803	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11997234	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12543856	0.81[EUR][1000 genomes]
rs12544731	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13280468	0.80[ASN][1000 genomes]
rs17608598	0.81[EUR][1000 genomes]
rs17681618	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2953509	0.80[ASN][1000 genomes]
rs2953510	0.80[ASN][1000 genomes]
rs2953517	0.80[ASN][1000 genomes]
rs2976177	0.80[ASN][1000 genomes]
rs2976179	0.82[ASN][1000 genomes]
rs2976181	0.81[ASN][1000 genomes]
rs2976201	0.81[ASN][1000 genomes]
rs4285463	0.87[ASN][1000 genomes]
rs4581032	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4961187	0.88[ASN][1000 genomes]
rs5024450	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55807259	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56039487	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56268675	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62509414	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62509421	0.82[EUR][1000 genomes]
rs6471273	0.87[ASN][1000 genomes]
rs6471279	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471280	0.87[ASN][1000 genomes]
rs6471281	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003059	0.80[ASN][1000 genomes]
rs7015490	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7017719	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7460028	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7460286	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7461767	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7462727	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7819454	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7824469	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7825405	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7835743	0.81[EUR][1000 genomes]
rs7838007	0.87[ASN][1000 genomes]
rs9283961	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017535	chr8:87261702-87367934	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87334800-87346400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:87339600-87342600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:87340800-87346000	Weak transcription	Liver	Liver
4	chr8:87341000-87343000	Weak transcription	Adipose Nuclei	Adipose
5	chr8:87341800-87346400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links