Variant report

Variant	rs17681992
Chromosome Location	chr10:27736936-27736937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10160095	0.89[EUR][1000 genomes]
rs11596273	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17749192	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2266065	0.81[EUR][1000 genomes]
rs2782556	0.81[EUR][1000 genomes]
rs2992005	0.80[EUR][1000 genomes]
rs34249485	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34901266	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652645	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs653082	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs656276	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27735200-27737000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:27735200-27737200	Enhancers	Primary T cells from cord blood	blood
3	chr10:27735200-27737200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:27735200-27739000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:27735400-27737400	Enhancers	Primary hematopoietic stem cells	blood
6	chr10:27735600-27738000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:27735600-27738400	Weak transcription	HMEC	breast
8	chr10:27735800-27738200	Weak transcription	NHEK	skin
9	chr10:27736000-27739000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:27736200-27738000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:27736400-27738800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:27736400-27739000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:27736600-27737400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr10:27736800-27739000	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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