Variant report

Variant	rs653082
Chromosome Location	chr10:27753813-27753814
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17681992	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2258132	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2266065	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2763293	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782556	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2992005	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34249485	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34901266	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs588756	0.92[EUR][1000 genomes]
rs636932	0.92[EUR][1000 genomes]
rs652645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668214	0.80[EUR][1000 genomes]
rs680814	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27750400-27759400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:27752200-27755000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:27752200-27755200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr10:27752200-27755400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:27752200-27755800	Enhancers	Fetal Thymus	thymus
6	chr10:27752600-27754800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:27752600-27755600	Enhancers	Thymus	Thymus
8	chr10:27752800-27754800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:27752800-27754800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:27752800-27755400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:27753000-27754800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:27753000-27754800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:27753000-27755000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:27753000-27755200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:27753200-27754000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:27753200-27754400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:27753200-27754400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:27753400-27754200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:27753400-27754200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:27753400-27754200	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr10:27753400-27754200	Enhancers	Primary hematopoietic stem cells	blood
22	chr10:27753400-27754200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:27753400-27754200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:27753400-27754400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:27753400-27754400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:27753400-27754800	Enhancers	Primary B cells from peripheral blood	blood
27	chr10:27753400-27755000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:27753600-27754000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr10:27753600-27754200	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr10:27753600-27754400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:27753800-27754000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:27753800-27754200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr10:27753800-27754400	Enhancers	GM12878-XiMat	blood

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