Variant report

Variant	rs17684025
Chromosome Location	chr10:18657334-18657335
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17611161	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
2	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart
3	chr10:18655000-18658600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:18656600-18657400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:18656600-18658400	Enhancers	NHDF-Ad	bronchial
6	chr10:18656800-18658000	Enhancers	Fetal Heart	heart
7	chr10:18656800-18658400	Enhancers	NHLF	lung
8	chr10:18657000-18658000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:18657200-18657400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr10:18657200-18657600	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:18657200-18657800	Enhancers	Stomach Smooth Muscle	stomach
12	chr10:18657200-18657800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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