Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165893674..165894516-chr1:166402664..166403578,3	MCF-7	breast:
2	chr1:165686936..165687730-chr1:165893570..165894520,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12118019	0.92[EUR][1000 genomes]
rs12119028	0.92[EUR][1000 genomes]
rs12569109	0.91[EUR][1000 genomes]
rs1663841	0.85[EUR][1000 genomes]
rs3790668	0.85[EUR][1000 genomes]
rs3790669	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3790670	0.85[EUR][1000 genomes]
rs3790674	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4656467	0.91[EUR][1000 genomes]
rs4657489	0.81[ASN][1000 genomes]
rs474766	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs475558	0.92[EUR][1000 genomes]
rs504436	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs505877	0.96[ASN][1000 genomes]
rs514163	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs530717	0.92[EUR][1000 genomes]
rs533929	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs537068	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561315	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs576213	0.92[EUR][1000 genomes]
rs6426943	0.92[EUR][1000 genomes]
rs9787031	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
3	chr1:165880600-165894200	Weak transcription	Right Atrium	heart
4	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:165882200-165894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:165883600-165896400	Weak transcription	Dnd41	blood
7	chr1:165893400-165894000	Enhancers	HepG2	liver
8	chr1:165893400-165895400	Enhancers	K562	blood
9	chr1:165893600-165894000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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