Variant report

Variant	rs533929
Chromosome Location	chr1:165888095-165888096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12118019	0.99[EUR][1000 genomes]
rs12119028	0.99[EUR][1000 genomes]
rs12569109	0.98[EUR][1000 genomes]
rs1663841	0.92[EUR][1000 genomes]
rs16851987	1.00[JPT][hapmap]
rs1768900	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3790654	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs3790668	0.95[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs3790669	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3790670	0.92[EUR][1000 genomes]
rs3790674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4656467	1.00[CEU][hapmap];0.83[JPT][hapmap];0.98[EUR][1000 genomes]
rs4657489	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs474766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475558	0.99[EUR][1000 genomes]
rs504436	0.99[EUR][1000 genomes]
rs505877	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs514163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs530717	0.99[EUR][1000 genomes]
rs537068	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs561315	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs576213	0.99[EUR][1000 genomes]
rs6426943	0.99[EUR][1000 genomes]
rs6682285	0.86[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs6687465	0.83[JPT][hapmap]
rs9787031	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
3	chr1:165880000-165888400	Weak transcription	Spleen	Spleen
4	chr1:165880600-165889000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:165880600-165894200	Weak transcription	Right Atrium	heart
6	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:165881800-165888400	Weak transcription	Fetal Intestine Small	intestine
8	chr1:165882200-165889200	Weak transcription	Fetal Brain Female	brain
9	chr1:165882200-165889400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:165882200-165894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:165883600-165888400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:165883600-165896400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links