Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10502760	0.87[EUR][1000 genomes]
rs12958869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12959850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12959929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12969866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1557327	0.82[EUR][1000 genomes]
rs1941593	0.82[EUR][1000 genomes]
rs2040199	0.82[EUR][1000 genomes]
rs34082081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35146061	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35662124	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35736134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35922250	0.84[AMR][1000 genomes]
rs35973186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36168553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3886993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62080535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62080540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62080553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62080555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7407802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9947910	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv833629	chr18:38791940-38959145	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:38805600-38807200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:38805800-38807000	Enhancers	Fetal Brain Male	brain
3	chr18:38805800-38807400	Enhancers	Fetal Lung	lung
4	chr18:38805800-38807400	Enhancers	HMEC	breast
5	chr18:38806000-38807200	Enhancers	NHEK	skin
6	chr18:38806200-38808200	Enhancers	Fetal Brain Female	brain

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