Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11876732	1.00[ASN][1000 genomes]
rs12958869	0.82[EUR][1000 genomes]
rs12959850	0.82[EUR][1000 genomes]
rs12959929	0.82[EUR][1000 genomes]
rs12969866	0.82[EUR][1000 genomes]
rs1539825	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1557325	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1557327	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17699014	0.82[EUR][1000 genomes]
rs1893300	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1941592	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2040199	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847680	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34082081	0.82[EUR][1000 genomes]
rs35736134	0.82[EUR][1000 genomes]
rs35973186	0.82[EUR][1000 genomes]
rs36168553	0.82[EUR][1000 genomes]
rs3886993	0.82[EUR][1000 genomes]
rs62080535	0.82[EUR][1000 genomes]
rs62080540	0.82[EUR][1000 genomes]
rs62080553	0.82[EUR][1000 genomes]
rs62080555	0.82[EUR][1000 genomes]
rs7228001	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7236694	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7407802	0.82[EUR][1000 genomes]
rs9947209	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9947910	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9957632	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:38790600-38791400	Weak transcription	Fetal Lung	lung

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