Variant report

Variant	rs17700752
Chromosome Location	chr7:38826335-38826336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1017028	0.87[ASN][1000 genomes]
rs10242048	0.84[ASN][1000 genomes]
rs10247503	0.86[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs10251912	0.88[ASN][1000 genomes]
rs10254567	0.88[ASN][1000 genomes]
rs10271176	0.88[ASN][1000 genomes]
rs10486677	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486678	0.83[ASW][hapmap];0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11971020	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11979824	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11980882	0.82[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap]
rs12533557	0.88[ASN][1000 genomes]
rs12672793	0.83[JPT][hapmap];0.86[YRI][hapmap]
rs12672885	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12674115	0.86[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs1468348	0.86[CHD][hapmap]
rs17700142	0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];0.81[LWK][hapmap];0.91[YRI][hapmap]
rs17700172	0.88[CHD][hapmap]
rs17700262	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17700392	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17767818	0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap]
rs17768153	0.83[ASW][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17768212	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17768711	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1859937	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2074655	0.83[ASW][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2074657	1.00[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2107743	0.88[ASN][1000 genomes]
rs2108507	0.85[CHD][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs2189855	0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2214666	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2240351	0.87[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs2240352	0.86[CHB][hapmap];0.98[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2240353	0.83[ASW][hapmap];0.85[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2240354	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2286082	0.86[ASN][1000 genomes]
rs2286084	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286086	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2286087	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286088	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286091	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286094	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2286098	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286104	0.85[CEU][hapmap];0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286105	0.85[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286106	0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs2286109	0.82[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap]
rs2392598	0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs28548028	0.88[ASN][1000 genomes]
rs34724372	0.82[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.85[TSI][hapmap]
rs3735347	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs3801129	0.87[ASN][1000 genomes]
rs3801139	0.86[CHB][hapmap];0.98[CHD][hapmap];0.89[JPT][hapmap];0.80[LWK][hapmap];0.88[ASN][1000 genomes]
rs3801140	0.86[CHB][hapmap];0.98[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs3801141	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801143	0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs3801145	0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs3801146	0.88[ASN][1000 genomes]
rs4723782	0.88[ASN][1000 genomes]
rs4723785	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs56002981	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57091471	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62444078	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62444107	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs733150	0.87[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs73368205	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7780625	0.85[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap]
rs7785911	0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs7786389	0.84[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7795874	0.86[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs886646	0.84[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:38763400-38828800	Weak transcription	HepG2	liver
4	chr7:38780800-38828800	Weak transcription	Gastric	stomach
5	chr7:38784800-38835000	Weak transcription	NHEK	skin
6	chr7:38785600-38834600	Weak transcription	HMEC	breast
7	chr7:38785600-38835000	Weak transcription	NH-A	brain
8	chr7:38787000-38827400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:38792200-38828000	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:38793400-38828600	Weak transcription	Small Intestine	intestine
11	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:38793600-38832600	Weak transcription	Brain Angular Gyrus	brain
13	chr7:38798200-38828800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
16	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:38804400-38836200	Weak transcription	Fetal Brain Male	brain
18	chr7:38806200-38827200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:38806200-38828800	Weak transcription	Pancreas	Pancrea
20	chr7:38806400-38827600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:38806600-38828800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:38806800-38828400	Weak transcription	Fetal Lung	lung
23	chr7:38806800-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:38806800-38828800	Weak transcription	Brain Substantia Nigra	brain
25	chr7:38806800-38828800	Weak transcription	Esophagus	oesophagus
26	chr7:38806800-38828800	Weak transcription	Thymus	Thymus
27	chr7:38806800-38828800	Weak transcription	Spleen	Spleen
28	chr7:38806800-38832800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:38809000-38827600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:38809200-38828600	Weak transcription	Brain Anterior Caudate	brain
31	chr7:38812600-38831400	Weak transcription	A549	lung
32	chr7:38812800-38834800	Weak transcription	HSMMtube	muscle
33	chr7:38813000-38828800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:38813600-38827600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:38813600-38828800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:38813800-38827400	Weak transcription	Osteobl	bone
37	chr7:38813800-38827600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:38813800-38827600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:38813800-38828800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:38813800-38830600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:38813800-38834200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr7:38813800-38836400	Weak transcription	HUVEC	blood vessel
43	chr7:38813800-38839600	Weak transcription	Right Ventricle	heart
44	chr7:38813800-38857400	Weak transcription	HSMM	muscle
45	chr7:38814000-38827400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr7:38814000-38827600	Weak transcription	NHDF-Ad	bronchial
47	chr7:38814000-38827800	Weak transcription	Brain Hippocampus Middle	brain
48	chr7:38814000-38828600	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:38814800-38828600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr7:38815000-38827600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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