Variant report

Variant	rs1770565
Chromosome Location	chr1:85227646-85227647
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:78466262..78468828-chr1:85227463..85229470,2	K562	blood:
2	chr1:85223699..85225270-chr1:85227472..85229574,2	K562	blood:
3	chr1:85223192..85225199-chr1:85227087..85228972,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1750484	1.00[ASN][1000 genomes]
rs1750485	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1750489	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1750491	0.99[ASN][1000 genomes]
rs1750493	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1770561	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1770563	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2792266	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85204200-85230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:85216800-85230000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:85223600-85228000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:85224200-85229400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:85224200-85229400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:85225000-85229600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:85225200-85229800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:85225400-85229600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:85225400-85229600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:85225400-85229600	Weak transcription	HMEC	breast
11	chr1:85225800-85228200	Weak transcription	Stomach Mucosa	stomach
12	chr1:85225800-85228400	Weak transcription	Fetal Heart	heart
13	chr1:85225800-85229400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:85225800-85229400	Weak transcription	Brain Anterior Caudate	brain
15	chr1:85225800-85230000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:85225800-85233600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:85226000-85229600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:85226000-85230000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:85226000-85230400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:85226200-85228600	Weak transcription	Brain Germinal Matrix	brain
21	chr1:85226600-85229200	Weak transcription	Fetal Brain Female	brain
22	chr1:85226800-85230000	Weak transcription	Fetal Brain Male	brain

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