Variant report

Variant	rs17705869
Chromosome Location	chr4:54215243-54215244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10007422	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11133252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11133257	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11725172	0.84[CEU][hapmap]
rs11731676	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11933772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11945292	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507517	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13103971	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13113985	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13130986	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13152012	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1383983	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1481817	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1481818	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1481821	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1871826	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2054588	0.82[AMR][1000 genomes]
rs2412397	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28765170	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3986366	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4103016	0.85[EUR][1000 genomes]
rs4385132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4435800	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4472196	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4864743	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4864748	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56056061	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62324288	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62324326	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6554068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6554072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6554089	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6554093	0.84[CEU][hapmap]
rs6810608	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6818181	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs6839876	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6846461	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7441849	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657388	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7682970	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7698145	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7699124	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs900111	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs922748	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9761504	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9998307	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54169800-54216200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:54172600-54215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:54188200-54218200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:54188600-54215400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:54201200-54220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:54201400-54215600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:54201800-54215800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr4:54202200-54226000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:54206600-54220200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:54209200-54215400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:54210400-54225600	Weak transcription	Small Intestine	intestine
14	chr4:54211200-54216000	Weak transcription	Thymus	Thymus
15	chr4:54211400-54219200	Weak transcription	Fetal Intestine Small	intestine
16	chr4:54211600-54219600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:54211600-54220200	Weak transcription	Fetal Stomach	stomach
18	chr4:54211800-54217800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:54212000-54220600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:54212000-54227200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:54212200-54215400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:54212200-54220800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:54212400-54217800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:54212600-54219200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:54212800-54219600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr4:54213200-54215400	Weak transcription	K562	blood
27	chr4:54213200-54220200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr4:54213400-54215400	Weak transcription	Fetal Intestine Large	intestine
29	chr4:54213400-54217200	Weak transcription	Liver	Liver
30	chr4:54213600-54215600	Weak transcription	Fetal Thymus	thymus
31	chr4:54213600-54216600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:54213600-54228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:54213800-54218600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr4:54213800-54230400	Weak transcription	Fetal Kidney	kidney
35	chr4:54214000-54215400	Weak transcription	HSMM	muscle
36	chr4:54214000-54218600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:54214000-54218800	Weak transcription	Adipose Nuclei	Adipose
38	chr4:54214000-54219200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:54214000-54221800	Weak transcription	Ovary	ovary
40	chr4:54214000-54230800	Weak transcription	Aorta	Aorta
41	chr4:54214000-54231200	Weak transcription	Lung	lung
42	chr4:54214200-54215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:54214200-54215400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr4:54214200-54215600	Enhancers	NHDF-Ad	bronchial
45	chr4:54214200-54216200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr4:54214200-54217400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:54214200-54218200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:54214200-54218400	Weak transcription	Primary B cells from cord blood	blood
49	chr4:54214200-54218600	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:54214200-54218800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links