Variant report

Variant	rs9761504
Chromosome Location	chr12:107479008-107479009
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:107478442..107480596-chr12:107484275..107485911,2	K562	blood:
2	chr12:107478152..107481119-chr12:107481154..107482782,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10007422	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11133252	0.81[ASN][1000 genomes]
rs11133257	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11731676	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11933772	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11945292	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12509702	0.81[ASN][1000 genomes]
rs13103971	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13113985	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13130986	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13152012	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1383983	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1481817	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1481818	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1481821	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17705869	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1871826	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2054588	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2412397	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2412402	0.81[ASN][1000 genomes]
rs28765170	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3986366	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4103016	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4385132	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4435800	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4472196	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4864743	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4864748	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56056061	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62324288	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62324326	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6554089	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6810608	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6839876	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6846461	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71597825	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7441849	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7657388	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7682970	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7698145	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7699124	0.85[AMR][1000 genomes]
rs900111	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs922748	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9684264	0.81[EUR][1000 genomes]
rs9998307	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948746	chr12:107205413-107949265	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:107469600-107484200	Weak transcription	Aorta	Aorta
2	chr12:107470800-107480200	Weak transcription	Left Ventricle	heart
3	chr12:107473000-107484800	Weak transcription	Thymus	Thymus
4	chr12:107473200-107485000	Weak transcription	Right Atrium	heart
5	chr12:107473200-107485200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:107473400-107484200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:107473400-107484400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:107473400-107485200	Weak transcription	Primary T cells from cord blood	blood
9	chr12:107473400-107485400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr12:107473600-107480000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:107473600-107480000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:107473600-107480200	Weak transcription	Psoas Muscle	Psoas
13	chr12:107473600-107482600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:107473600-107482600	Weak transcription	A549	lung
15	chr12:107473600-107484400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr12:107473600-107484800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:107473600-107484800	Weak transcription	Adipose Nuclei	Adipose
18	chr12:107473600-107485400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr12:107473600-107485400	Weak transcription	Brain Angular Gyrus	brain
20	chr12:107473800-107482600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:107473800-107484200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr12:107473800-107484600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:107473800-107484800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr12:107473800-107485200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr12:107473800-107485200	Weak transcription	Stomach Mucosa	stomach
26	chr12:107474200-107484200	Weak transcription	HepG2	liver
27	chr12:107474600-107484000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:107474600-107485000	Weak transcription	K562	blood
29	chr12:107474600-107485200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr12:107474800-107484600	Weak transcription	Fetal Heart	heart
31	chr12:107476400-107485200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr12:107476600-107482600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr12:107476800-107480200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:107477600-107485200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:107478600-107480200	Weak transcription	Fetal Stomach	stomach
36	chr12:107478600-107484400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr12:107478800-107484800	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links