Variant report

Variant	rs17708798
Chromosome Location	chr8:10235282-10235283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57952229	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7820654	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10223800-10235400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:10224000-10255800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:10228600-10247800	Weak transcription	Liver	Liver
5	chr8:10229000-10239400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:10232200-10235400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:10232800-10235600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:10233000-10235400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:10233000-10235600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:10233400-10235600	Enhancers	Fetal Brain Female	brain
11	chr8:10233400-10236200	Enhancers	Fetal Muscle Leg	muscle
12	chr8:10233600-10235800	Enhancers	Right Atrium	heart
13	chr8:10233600-10236200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr8:10233800-10236800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:10233800-10240000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:10233800-10241400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr8:10233800-10252400	Weak transcription	Fetal Brain Male	brain
18	chr8:10234000-10236200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:10234000-10241200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:10234200-10235400	Weak transcription	HSMMtube	muscle
21	chr8:10234600-10236000	Enhancers	Left Ventricle	heart
22	chr8:10235000-10235600	Enhancers	Duodenum Mucosa	Duodenum
23	chr8:10235000-10236000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr8:10235000-10236200	Enhancers	Pancreas	Pancrea
25	chr8:10235200-10235400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr8:10235200-10235400	Enhancers	Brain Cingulate Gyrus	brain
27	chr8:10235200-10235600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr8:10235200-10235800	Enhancers	Psoas Muscle	Psoas
29	chr8:10235200-10236200	Enhancers	Right Ventricle	heart
30	chr8:10235200-10236200	Enhancers	Spleen	Spleen
31	chr8:10235200-10237200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:10235200-10237400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr8:10235200-10252400	Weak transcription	Brain Hippocampus Middle	brain

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