Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10245247	0.80[ASN][1000 genomes]
rs10258946	0.84[ASN][1000 genomes]
rs10266149	0.84[ASN][1000 genomes]
rs10486798	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs12111908	0.84[ASN][1000 genomes]
rs17171603	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17713951	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17714049	0.84[ASN][1000 genomes]
rs17770356	1.00[EUR][1000 genomes]
rs17770379	1.00[EUR][1000 genomes]
rs17770594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17770612	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17770625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1989533	0.82[ASN][1000 genomes]
rs2329455	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2329461	0.84[ASN][1000 genomes]
rs2329462	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2329463	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4723881	0.84[ASN][1000 genomes]
rs4723882	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4723883	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4723884	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4723885	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs58299139	0.92[ASN][1000 genomes]
rs59071947	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61493712	0.84[ASN][1000 genomes]
rs6968742	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs73375695	0.92[ASN][1000 genomes]
rs7785964	0.92[ASN][1000 genomes]
rs7796063	0.91[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39589400-39596200	Enhancers	Fetal Brain Male	brain
2	chr7:39593200-39595200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:39594200-39595400	Enhancers	Brain Germinal Matrix	brain
4	chr7:39594200-39595600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:39594800-39595200	Enhancers	NHDF-Ad	bronchial
6	chr7:39594800-39600000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:39595000-39595400	Enhancers	Colon Smooth Muscle	Colon
8	chr7:39595000-39600400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: