Variant report

Variant	rs17770356
Chromosome Location	chr7:39570749-39570750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10486798	0.91[JPT][hapmap]
rs17171603	1.00[JPT][hapmap]
rs17713754	1.00[EUR][1000 genomes]
rs17770379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17770594	1.00[EUR][1000 genomes]
rs17770612	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17770625	1.00[EUR][1000 genomes]
rs2329455	1.00[JPT][hapmap]
rs2329462	0.91[JPT][hapmap]
rs2329463	0.91[JPT][hapmap]
rs4723882	0.91[JPT][hapmap]
rs4723883	0.90[JPT][hapmap]
rs4723884	0.91[JPT][hapmap]
rs4723885	0.91[JPT][hapmap]
rs59071947	1.00[EUR][1000 genomes]
rs6968742	0.91[JPT][hapmap]
rs7796063	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39567200-39573200	Weak transcription	Small Intestine	intestine
2	chr7:39568200-39571000	Enhancers	Dnd41	blood
3	chr7:39568200-39576400	Enhancers	Fetal Intestine Large	intestine
4	chr7:39568400-39576400	Enhancers	Fetal Intestine Small	intestine
5	chr7:39568600-39571200	Enhancers	Duodenum Mucosa	Duodenum
6	chr7:39569600-39570800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:39569600-39571000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:39569600-39579600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:39569800-39570800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr7:39569800-39570800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:39570000-39570800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:39570000-39571200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:39570200-39570800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:39570200-39571000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:39570200-39573800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:39570200-39579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:39570400-39570800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:39570400-39574200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:39570400-39577200	Weak transcription	Fetal Brain Male	brain
20	chr7:39570400-39579600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:39570600-39570800	Enhancers	Stomach Mucosa	stomach
22	chr7:39570600-39573400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:39570600-39574000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:39570600-39579400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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